Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932445.1_cds_XP_016478973.1_70559
CDS Infomation

[gene=LOC107800328] [db_xref=GeneID:107800328] [protein=violaxanthin de-epoxidase, chloroplastic-like] [protein_id=XP_016478973.1] [location=join(2055..2363,3864..5177)] [gbkey=CDS]
Sequence

ATGAATGTAAACGTAGCACCATCCCCCTCCATCAATTCTCCGGCTCCTTTTCCGGTTAAT
CGGCGGTCCAGTTTCGCCGGACTTCCAAACCTTATTCTTCTCCGCTGCCGGAAAACTAAA
GTGTCCATATTTTCTTCTTCTCTTGACCGGAAAATCAGAGCTACAAGAAGCATAGTAGCT
GCTGCTGCTGTGGAAATGAAAGAAGCAGAGAAAAAGACAAGTAATCCAGTGAGAATAGTG
AGTATTGTTGGAGAGGATAGTGTTAGCCCTCTCAGCTCTGCTCCTTGGCTAGATGTCATG
CTTCACACTGCAGAGAGACTGAAATGGGTTGATGAAGAGTTCGAAATGATTGTCTTTTCT
GACAACTTTATCAATTCTCAAGATGAAACTGTCAACCGCGTTGGAAATGAGCTGGATCGT
GCTGATATTTTGGTGCTGGTTGCTGTCAGTAAGGAAGGATCAGTCAACTGGATACAGACT
AACAGCCAGAATGTCTCAAACATCATATGGTTTGATTCCTCTTCGGCACTGAGAAACAAG
CTGGGCGGAATTTTGATTGAAACTGAAAAAAGAGGAGATATATTCAGCAGTTTACTTCCA
TTCTCTCAATCGAAGAAACTGAATGAATCTGTAGAGATAGCCCGAACAGTGTCTGAGGCT
TGGGAAAGGCATAACTCTGATGACATGCGGTTCTGCTTATTAGTTATAATTAATGCTTAT
ATAACGCCGGTTTCAACACTGCAGAACCTTAGAGCAAAAGGATTCTCCACCCTGAACTGC
ATGGTGACAAATTGTGGACCTCAGATATTGAATTGCCTACTGGATCCTAATTGTAGGAAG
GCACTTCAGTGCTTGAACCAGTGCAGCCCTGTAGATCAAGTATGCAATTATCGGTGTATT
GCTTCATATGAGAGTCAATACCTGGAAGAGTTTTCTCTCTGTGTACTACAGAAGAATAAC
TGTCTTGAGCTCGACGCAAAGATCCCTGAAAAACCTCATGTGCCTCCAATGACCGAGTTT
CGAGGGGAAATATTGTCTTCTGAAATTGCTGAAGACATTTTTGTGGGTTGGTTAGGGACA
TTGAATTGGAGTTGGCGCGTTGTAGCAGGGCAGAATCCAGCTTATGATCAATTTCCATGC
CAGTACCAGCTATACTATCGGGGAAAAGCTAGAGGATCATTCTGGTATGAGCCAGTTTTC
CAGGTAAGAACACTTGAAGATAACTTAGTCTGGAGAAGGCGAAAGTATAGAGTGAAAAGA
GGAAAAGTTCCCGGAACATTTCAATTCAGTGTATTGGATAATGGAGTTGTTTCAATTGAG
TCCTGGACAATTGTGGATGTTTCTGATGATTTAAGTTGGGGTTTGTTTCACTATCATGGA
GCTGCACGAGTGGCGGGGCAGTCATATACTGGGGCGGTTCTTGTGAGCCCAGATGGCCAA
TATCCAGCTGAGAGAGAAAAAGATAGGTTGATATCTGCATTGGATAGATGTGGCATCAAA
GAGTGGGAGCTATTCAATGTTGATAATTGTTCATGTGAAGGTCCACCACTGGGGCTTCCA
GAGGGGTCAAGTTTGCATTCTAAGATTGAAGTCCAAGAGGGCAGGACACATTCTTCAGTA
TAG

Peptide Sequence

PEP ID

XP_016478973.1
PEP Infomation

PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Nicotiana tabacum]
Sequence

MNVNVAPSPSINSPAPFPVNRRSSFAGLPNLILLRCRKTKVSIFSSSLDRKIRATRSIVA
AAAVEMKEAEKKTSNPVRIVSIVGEDSVSPLSSAPWLDVMLHTAERLKWVDEEFEMIVFS
DNFINSQDETVNRVGNELDRADILVLVAVSKEGSVNWIQTNSQNVSNIIWFDSSSALRNK
LGGILIETEKRGDIFSSLLPFSQSKKLNESVEIARTVSEAWERHNSDDMRFCLLVIINAY
ITPVSTLQNLRAKGFSTLNCMVTNCGPQILNCLLDPNCRKALQCLNQCSPVDQVCNYRCI
ASYESQYLEEFSLCVLQKNNCLELDAKIPEKPHVPPMTEFRGEILSSEIAEDIFVGWLGT
LNWSWRVVAGQNPAYDQFPCQYQLYYRGKARGSFWYEPVFQVRTLEDNLVWRRRKYRVKR
GKVPGTFQFSVLDNGVVSIESWTIVDVSDDLSWGLFHYHGAARVAGQSYTGAVLVSPDGQ
YPAEREKDRLISALDRCGIKEWELFNVDNCSCEGPPLGLPEGSSLHSKIEVQEGRTHSSV

Transcript Sequence

Gene sequence data has not been registered.